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Atlas
Type
Language
Assay
Columns (7/13)
Name
Atlas
Type
Assay
Publication
Homepage
Details
cBioPortal
HTAN DCC
Web application
Bulk DNA, Bulk RNA-seq
ISB-CGC Google BigQuery
HTAN DCC
Database
scRNA-seq, Imaging
ISB-CGC Google BigQuery Notebooks
HTAN DCC
Notebook
scRNA-seq, Imaging
Single Cell Toolkit
HTAN BU
Suite
scRNA-seq
CellXGene
N/A
Web application
scRNA-seq
MCMICRO: Multiple-choice microscopy pipeline
HTAN HMS
Suite
Imaging
CytoCommunity
HTAN CHOP
Annotation, Analysis, Visualization
scRNA-seq, CODEX, MERFISH, STARmap, MIBI, IMC, 10x Visium
UCSC Xena
N/A
Web application
Imaging, scATAC-seq, scRNA-seq
cancer.usegalaxy.org
N/A
Suite
Bulk DNA, Bulk RNA-seq, scRNA-seq, Imaging
scATAC-pro
HTAN CHOP
Library, Command-line tool
scATAC-seq
SCRABBLE
HTAN CHOP
Library
scRNA-seq, Bulk RNA-seq
SHIFT
HTAN OHSU
Library, Command-line tool
H&E, MxIF
ASHLAR
HTAN HMS
Library, Command-line tool
CODEX, CyCIF, mIHC, MxIF, IMC, MIBI